rs49876149 SNP Detail

Summary

• ID
  rs49876149
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51418322 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATTTGCATG CCTCGAATTT TACTACTGAA ACCTTCTAAC
  ATAGGAGACC AGAGGAGAAA GTGGAGCTTA GGAAAACAAG CCTCTTTCCC ACCATCCAGC
  R
  TGTCTAGTTT AGAGAGTCCT GACTCGTTTG TAGCCCCTGC CTACACTGGC TTAACAAGGA
  TGAGTTTAAG GGTCATACCT GGAACTGGAG GGTCATTAAG                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
ss60886247	NES15973412	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ
rs49876149					SNP	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886247	NES15973412	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51418322 () rs orientation: forward

Symbol	Name	Function Class
Nfe2l3	nuclear factor, erythroid derived 2, like 3	within coordinates
Rr135769	regulatory region 135769	879 bp proximal
Rr140576	regulatory region 140576	322 bp distal
Rr149651	regulatory region 149651	820 bp proximal
Rr379346	regulatory region 379346	545 bp upstream