rs49876252 SNP Detail

Summary

• ID
  rs49876252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:78871797 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T GCAGAAGACA GCCACCACCC TGGGTCGTGG GAACCGCTGC
  TGAGATTCCC AAGAGATGTC ATGAGAAGAG CCTCTGTGGA CCCAAGAAGT GAATCGTGAG
  R
  AAAAAAAAAA AAAAAAAAAA AAAAAGTCGG TTTTCAGTTT AACCCAAACC GGAGGAAACC
  AGGGTGAGTT CAGATCTTTC CTCTCTCCCT CTCCTGACCA C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss135365537	ENSMUSSNP6107565	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49876252					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:78871797 () rs orientation: forward

Symbol	Name	Function Class
Gm9762	predicted pseudogene 9762	1866 bp downstream
Gm65474	predicted gene, 65474	within coordinates
Gm66687	predicted gene, 66687	964 bp downstream
Rr578452	regulatory region 578452	within coordinates