rs49877163 SNP Detail

Summary

• ID
  rs49877163
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60693472 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTACC TCTTCAGCCT GTCCGAATGC
  Y
  GCCACCACCA ACCTACGTTT GGGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63528643	NES17014249	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49877163					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63528643	NES17014249	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60693472 () rs orientation: forward

Symbol	Name	Function Class
9930014A18Rik	RIKEN cDNA 9930014A18 gene	1342 bp upstream
Cpgi7129	CpG island 7129	1080 bp proximal
Lratd2	LRAT domain containing 1	within coordinates
Rr502991	regulatory region 502991	175 bp proximal
Rr502992	regulatory region 502992	659 bp proximal
Rr502993	regulatory region 502993	1425 bp proximal
Tssr131400	transcription start site region 131400	1324 bp upstream
Tssr131401	transcription start site region 131401	1356 bp upstream
Tssr134471	transcription start site region 134471	1903 bp upstream
Tssr134472	transcription start site region 134472	1766 bp upstream
Tssr134473	transcription start site region 134473	1444 bp upstream
Tssr134474	transcription start site region 134474	582 bp downstream