rs49877785 SNP Detail

Summary

• ID
  rs49877785
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30908882 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAATGTGTG CTGGTACACG
  TGTGAGAGCT GGTACACTTT TGTAGGCATG CATATGCAAG CCCACGTTTG ATACCCAGAG
  TCATTTTTCA GCACTCTTCC ATGATCTCTC AATCAAACCC AGAACTTGTG GATATGGCCA
  GTCTTGCTAG CTAGCTTGCT CTGGGCTCTC CTGTTTTCTC CTTTTGAAGT TGGACTCAGA
  M
  AGCTCCTTAG GCTCACCCAG AATTTCCATG GATTTGGGGG CTCTGAACTC TCAGTTACCT
  GCCATGCACT TTAACTGCTG ACCCTTTTTG GACATCCAGG GCTTGGCAAC CTCACTTTTT
  CTCACTTGGC TTGCAGGATT GGATCATTCC ACTCTTCCTC TGTCAGCATT TTGAGGGTAC
  AGACAAAGAA GGCACAGCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60988987	NES16133968	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49877785					SNP	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60988987	NES16133968	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30908882 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18840	CpG island 18840	880 bp distal
Gm37292	predicted gene, 37292	343 bp downstream
Gm73020	predicted gene, 73020	within coordinates
Rr645057	regulatory region 645057	1105 bp distal
Rr645058	regulatory region 645058	469 bp distal
Rr645059	regulatory region 645059	929 bp distal
Tssr65855	transcription start site region 65855	1618 bp downstream
Tssr65856	transcription start site region 65856	1094 bp downstream
Tssr65857	transcription start site region 65857	1067 bp downstream