rs49877910 SNP Detail

Summary

• ID
  rs49877910
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:103753122 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAT GATGACTCTC TCCACTCCTA
  Y
  AGCTGTGAGG GTAGAAGGAT CCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135564724	ENSMUSSNP4006455	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320858672	CHEV_3_103649729	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49877910					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:103753122 () rs orientation: forward

Symbol	Name	Function Class
Bcl2l15	BCLl2-like 15	within coordinates
Tssr31007	transcription start site region 31007	1001 bp upstream
Tssr31008	transcription start site region 31008	1029 bp upstream
Tssr31009	transcription start site region 31009	1051 bp upstream
Tssr31010	transcription start site region 31010	1088 bp upstream