rs49879828 SNP Detail

Summary

• ID
  rs49879828
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:139804535 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CAGGGAGATT GTCCCCACTA GTGCTCTGGC CCCAATTCAA
  ATAGCACTCA CACTGGAGGT GTGGCAGGGT GGAGATGGAA GCCAGGAGCT AGCTTCTTGT
  R
  GGTTAAGGTG CTCAGGTGGG TCGAGAGGTC ATGGGTGTCT CTCTGTGCCC CCTTCTACCT
  TTATAGGTTC CAGAAAGCCT GGGTGATGAG TCCAGATTGG T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144568119	ENSMUSSNP2223364	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49879828					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139804535 () rs orientation: forward

Symbol	Name	Function Class
Gm26938	predicted gene, 26938	Intron
Rr623417	regulatory region 623417	1174 bp distal
Rr623418	regulatory region 623418	1269 bp distal
Rr623419	regulatory region 623419	212 bp proximal
Tmem184a	transmembrane protein 184a	Intron
Tssr49531	transcription start site region 49531	1311 bp upstream
Tssr54187	transcription start site region 54187	1126 bp downstream
Tssr54188	transcription start site region 54188	1153 bp downstream