rs49880247 SNP Detail

Summary

• ID
  rs49880247
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:52315199 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTCTAAGTCA CAATGCAAAT ATGTAACCAT ACTCAACTCC
  AAAAGTGCCA GGTTTGGACC CCGACGATGG TAAGCTTTAA GTCTCTTTAG AGCCTATTTT
  T
  CCTGACAAGC AGCAGAAATC ATTGGCCTAT TTTTTTTTTT TTTTTTTTTT TTTTTGTCGC
  TGCGGTTTTT CGTACTTCTA CCTTTGCTTC TCAGCGCTC                       
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146590320	ENSMUSSNP4569730	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320303833	CHEV_2_52280707	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49880247					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:52315199 () rs orientation: forward

Symbol	Name	Function Class
A430018G15Rik	RIKEN cDNA A430018G15 gene	within coordinates
Arl5a	ADP-ribosylation factor-like 5A	313 bp upstream
Cpgi11647	CpG island 11647	29 bp distal
Rr556939	regulatory region 556939	297 bp distal
Rr556940	regulatory region 556940	232 bp distal
Rr556941	regulatory region 556941	within coordinates
Tssr494	transcription start site region 494	244 bp upstream
Tssr17726	transcription start site region 17726	166 bp downstream
Tssr17727	transcription start site region 17727	54 bp upstream
Tssr24072	transcription start site region 24072	381 bp upstream
Tssr24073	transcription start site region 24073	365 bp upstream
Tssr24074	transcription start site region 24074	271 bp upstream