rs49882023 SNP Detail

Summary

• ID
  rs49882023
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:147976505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGCTGT CATTGTTACC
  AGCACTTGCT TATAACCTGA TTCGGGGGTA ATTAAGGACT GAAAAGGTAA TCAGGATTCA
  AGTGTCTTGA AGCTTACAAT TGGGATTTGT GCTTCAAAGC CTTAGATACT TAGAAAGAAA
  GCCCCTCTGT ATGCCTTAAA ATGGTCCAAA AGTCTAATCA CCAACTTGAG AGAGTAGATA
  Y
  TGCTGCTAGT CAGAGTGTGG CAGATACAGA GAGAACCCAG AAAGACCCCT CTCGTCTCTA
  AGTAAATAAA TCTACTTTCA TTGTTTACAT TAATGGGCTC TGGAATCTAC CCAAATGTGA
  TTGAAATCAA AGTATCCTTT ACACATCCCA AATATACTGC ATTCATCTTT ATCCCTGGGC
  ACCAGTAGCC GGTTTATGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136057857	ENSMUSSNP3519378	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss321014823	CHEV_3_147933833	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49882023					SNP	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:147976505 () rs orientation: forward

Symbol	Name	Function Class
Rr587183	regulatory region 587183	1087 bp proximal
Rr587184	regulatory region 587184	1701 bp proximal