rs49882721 SNP Detail

Summary

• ID
  rs49882721
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:96476652 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG TATCCAGGAC CCTCCTCCCA
  W
  AATCAACAGG CTCTCCTAAG CGCTC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135516967	ENSMUSSNP2244617	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320842110	CHEV_3_96373259	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs49882721					SNP	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:96476652 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13568	CpG island 13568	284 bp proximal
Rr581320	regulatory region 581320	18 bp proximal
Rr581321	regulatory region 581321	1400 bp proximal