rs49882757 SNP Detail

Summary

• ID
  rs49882757
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:88900036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAGC AGAGACCAGC TCCTTGCGCA
  G
  GTTAAAGGAG GAGGAGAAGA GAGTC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss132549859	ENSMUSSNP5867413	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		G
ss323783752	CHEV_11_88870524	CHEVERUD	SCREENING_POP	f	SNP		G		G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs49882757					SNP	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88900036 () rs orientation: forward

Symbol	Name	Function Class
Rr454279	regulatory region 454279	290 bp proximal
Trim25	tripartite motif-containing 25	Coding-NonSynonymous
Tssr104065	transcription start site region 104065	1081 bp downstream
Tssr104066	transcription start site region 104066	1683 bp upstream
Tssr104067	transcription start site region 104067	1759 bp upstream