rs49883037 SNP Detail

Summary

• ID
  rs49883037
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:15147640 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAATCATGT TTTCATGGGG
  AGAAAATGGT TGGCCCCCAA AGCCTGAATC CTGTGTTGGC ACTGCATGGT GATGTGGGGA
  GAAGGCTGCC TGGAGGTGGG GTTGAAGCTT CGATTAAGTC TTACACAAGT TTTAATTATT
  GATATAAATT TCTCAGCCAA TTTTTTAAAA AGTCTAGATA ATTCCTTCAC GACAAATCAA
  R
  GACTCCTTGC CCCTCCCCCA TTATCTTCAA AATCCCTGAC TGGCCATTAT GATAGTTGAT
  GTCCTCACAT TTTCATTTTT CATACTCAAG TGTATTTAGC CTCTGGCCCA CCTCCTTCAT
  GCTTGGACTT TAATAAGGAG TGATGGCTTA GAGAAGGGGA GGGGCAGGGA CAAACGAGGC
  TCCTTTGCAT GCTTTGCCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321047396	CHEV_4_15074787	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49883037					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:15147640 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14054	CpG island 14054	1136 bp proximal
Necab1	N-terminal EF-hand calcium binding protein 1	within coordinates
Rr97381	regulatory region 97381	1630 bp distal
Rr100616	regulatory region 100616	within coordinates
Tssr40968	transcription start site region 40968	1301 bp downstream
Tssr40969	transcription start site region 40969	1321 bp downstream
Tssr40970	transcription start site region 40970	1337 bp downstream
Tssr40971	transcription start site region 40971	1371 bp downstream
Tssr40972	transcription start site region 40972	1411 bp downstream