rs49884510 SNP Detail

Summary

• ID
  rs49884510
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7881847 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAAAACTCG GAAAAAGCCA
  AATTGCCACC AGACACTTCC AAGTGTTCTT CTCCGTTTCC ATCACCTGCC CAAGCGCCAT
  GATCCTCCTC ATCCTTATTC CAAGGGGAAA ACTCCTTCAA GAAAAATCTC TGTAAAGTTG
  TTGCTCTAGG GGCTGGAGAG GTGTCTCAGT GGTTAAGAGC ACTGACTGCT CTTCCAGAGG
  W
  TCTGAGTTCA ATTCTCAGCA ACCACATGGT GGCTCACAAC CATCTGTAAT GGGATCAGAT
  GCCCTCTTCT GGGGTGTCTG AAGACAGCTA CTGTGTACTC ACATACATTA AATAAATAAA
  ATCTCTTTTT AAAGAAAAAG TGGGGGGAAA CAATCAAATA GGGACTGGAG AGATGGCTCA
  GGAGTTAAGA GCACTGGCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss134083632	ENSMUSSNP2047739	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325888501	CHEV_X_7592734	CHEVERUD	SCREENING_POP	f	SNP		A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49884510					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7881847 () rs orientation: forward

Symbol	Name	Function Class
Glod5	glyoxalase domain containing 5	within coordinates
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Rr394694	regulatory region 394694	1223 bp downstream
Rr689712	regulatory region 689712	1667 bp distal
Rr689713	regulatory region 689713	56 bp proximal
Rr689714	regulatory region 689714	1433 bp proximal
Rr689715	regulatory region 689715	1649 bp proximal
Rr689716	regulatory region 689716	1732 bp proximal
Tssr162841	transcription start site region 162841	27 bp upstream
Tssr162842	transcription start site region 162842	203 bp downstream