rs49885661 SNP Detail

Summary

• ID
  rs49885661
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18301307 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCAA CAAAACCTTG AGCAACACAG
  M
  TGATAAGTAT CGACATGCCC TCAGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss148452263	ENSMUSSNP4482976	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	C		C
ss322115424	CHEV_7_19152731	CHEVERUD	SCREENING_POP	f	SNP				A		C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49885661					SNP	C	A	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18301307 () rs orientation: forward

Symbol	Name	Function Class
Psg27	pregnancy-specific beta-1-glycoprotein 27	77 bp upstream
Tssr2095	transcription start site region 2095	167 bp downstream
Tssr70834	transcription start site region 70834	185 bp upstream
Tssr70835	transcription start site region 70835	84 bp upstream
Tssr70836	transcription start site region 70836	37 bp upstream
Tssr70837	transcription start site region 70837	within coordinates
Tssr70838	transcription start site region 70838	136 bp downstream