rs49886261 SNP Detail

Summary

• ID
  rs49886261
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:96082759 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TTAATGCTAC ATTGACGTTA CTACTTTGAA AGAGAGGAAA
  GCATCACATC TGATTACTTT GTCATGTTTT TAAAAAAGTA AGATGAGGAG GGCTTACAAA
  W
  AAACATAGAA TGTACTTTAG TGTTTATATT TAACAGTAGA TAAGACCATC CAGTATATTA
  ACAGAGTTAA AATGACTATA TAGCTTTTTA AGGTTGTTTT A                    
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss144978479	ENSMUSSNP4273972	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49886261					SNP	T	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:96082759 () rs orientation: forward

Symbol	Name	Function Class
Gm69977	predicted gene, 69977	966 bp downstream
Rr371742	regulatory region 371742	1270 bp upstream