rs49886739 SNP Detail

Summary

• ID
  rs49886739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171073334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAGCGGATGG GTACTCGGGG GTGTGGGTTG GTTGCAGTTT
  TTTAGTAGCT GTGCTCAAAG AAGAAACAAA AGGAAAGAAA TTAGATTTAG GGGTTGGTCT
  Y
  TCTCTCTTCC CCCCCCTATC TTTCGTTCTC TCCTCTCTAG TGATAAGGAG TGAAATAGGG
  GAGGGGTAAA GAGGAGGGAA AAGGAGAAGC CACAAAATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss119996759	PARCsnp_1.12457	PARC_SEQ	INBRED	f	SNP		C	T
ss119998504	PARCsnp_1.01520	PARC_SEQ	INBRED	f	SNP		C	T
ss146158190	ENSMUSSNP6127056	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320117535	CHEV_1_173175896	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49886739					SNP	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171073334 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1016	CpG island 1016	1119 bp proximal
Gm71631	predicted gene, 71631	within coordinates
Ndufs2	NADH:ubiquinone oxidoreductase core subunit S2	within coordinates
Rr372446	regulatory region 372446	586 bp upstream
Rr423259	regulatory region 423259	1347 bp proximal
Rr423260	regulatory region 423260	1374 bp proximal
Rr423261	regulatory region 423261	1901 bp proximal
Tssr10000	transcription start site region 10000	1587 bp upstream
Tssr15023	transcription start site region 15023	1331 bp downstream