rs49887120 SNP Detail

Summary

• ID
  rs49887120
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25793258 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTTGGT GTTTGACACC
  CCTCGGGAGG CACCGCTTTG GAAGAGACTG GTAACAGCAG GGTGGGACCG GCTACTTAGC
  TGTTCTCAGT CTGAAAGGAT TCTGGAAAGG GGCTCTATTT AACCCAAGCA CTGGAGTCCA
  ACACAGCCTC TGCCGTGTGA CAGGTGTGTG CGGAGCCCAA GATGTGTTGG GAACAGCTAT
  Y
  GTTTCTACTG CTTTGTCCCA TGCCTCTGGA GCTCCTGGGT TCCTGAACTT CAAGCTGGGC
  CCCATCCTTC ACCCTATCAG GGCCCTGGGT GGAGCTGACT TCCAACAGTA TACAGTGGGT
  CTTGGTACTT CCTCCTTGGC ATTCGACAGT TGGTGTTTTT GAAGTCAGAG CCATCCTCAG
  TAGGCTCCTA GGGGATCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60552828	NES16573258	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49887120					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60552828	NES16573258	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25793258 () rs orientation: forward

Symbol	Name	Function Class
Cerox1	cytoplasmic endogenous regulator of oxidative phosphorylation 1	within coordinates
Tg(CD3E)26Cpt	transgene insertion 26, Cox Terhorst	within coordinates
Tssr143167	transcription start site region 143167	136 bp upstream