rs49887440 SNP Detail

Summary

• ID
  rs49887440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:83724360 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTGGGC CTTTTGTGGT
  CATCCACTTA AAAGTTTATA ATATAGCTTA AATATCCTCT CTCTGAGAAG GGGCCAGCTT
  TCTTCTCATC ACAAAGGAGA GTTTGAAGTA AAGCCAAACA TTTCCAGACT CTCCTGACAA
  CAGCAGAACT TTTACATGAG CTAGCAGTTG TGTAAAACAT AGAGAGAAGA ACTTCCTGTT
  R
  ACATGTGTTT TCTCTTATTC CTGAATTTTA TAAACCTGGT ACTATCTTTT CTTTTCTACA
  CCTCCAGTGA TAATGTCTGT AAGACAGAAC CAGTTTTGAA GACTTCAAAT ATCAAATGTT
  CCATCCTGTG CTATGAACCT CCATTATGCA TTATGAGTTC CTACAGTCTG AGTCACTGTC
  TTTATTCTGG AAAGAGTAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61892641	NES17096064	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49887440					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61892641	NES17096064	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:83724360 () rs orientation: forward

Symbol	Name	Function Class
Gm55122	predicted gene, 55122	within coordinates
Mef2c	myocyte enhancer factor 2C	within coordinates
Rr483254	regulatory region 483254	1678 bp distal
Rr483255	regulatory region 483255	998 bp distal
Tssr120506	transcription start site region 120506	1757 bp downstream
Tssr120507	transcription start site region 120507	1098 bp downstream
Tssr120508	transcription start site region 120508	607 bp downstream
Tssr123330	transcription start site region 123330	1221 bp upstream
Tssr123331	transcription start site region 123331	557 bp upstream