rs49887508 SNP Detail

Summary

• ID
  rs49887508
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34583856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTTTCAGGC TCAAGTTAAA
  CACCCTAGAC ACAGCCAAGC ACAGTGTCTA GAATGGTACT TCAGTGCTGA TACTCAGTAC
  CCTACATGCA GAGTGGGATG AGAAAAAAAA AACCTATGAA AGGAAGGTCT TTCTCTCTCC
  CAGGTGCCTT CTTCCAATCT GTATTTAAAG TGTCTGTCTA ACAAGCCAAA ATAAGCTTTA
  K
  ATGCAAATAT CTAGTCAAAA ACTCTGACCC ATCATTGATT CTGCTCCACT GAATAGTATG
  CCCTATTTTC TCCTCTGTGA AAAATTACAC ACACACACAC ACACACACAC ACACACACAC
  ACACACGCAG AGGCATGCAT GCACACACAT GTACATTTGT ATACACACAA AGCAGAGCAA
  AAGAAACAGA GAGGCAGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63254868	NES17488624	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49887508					SNP	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63254868	NES17488624	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34583856 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1514 bp upstream
Rr405932	regulatory region 405932	1056 bp upstream
Rr546756	regulatory region 546756	1024 bp proximal
Rr546757	regulatory region 546757	1525 bp proximal
Tssr156136	transcription start site region 156136	1067 bp upstream
Tssr156137	transcription start site region 156137	1471 bp upstream