rs49887515 SNP Detail

Summary

• ID
  rs49887515
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:52846383 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCATAAG TCAGATACTG
  TTCCAGGAGG GGGTGAAGTG GAGTGGGACG GGAAGAAAAG AGAGTATGAA GCAGCTCTCT
  GAGACAATCC TGGCTTGTTC ATATTTCTCT ATTGGGGATA TGGTGGTGGG TTTGAATTAA
  ACAAAAGGTT ATATAGTTTC TGGGGAAGGG CGTGAGAATA TCCAGGGAGG GAAAGGGCAC
  W
  CATTGCCTGA AGGATTCTGC TACTGAGATG CCTCGTTAGT TCGGCGAGGT ATCCTAGGTG
  CTGAGTGGTC ACTGATTAAG TGGGACAAGC TGGTTGGGAG TCGCCTAGTT GAATGCTCTG
  AGGCAGGTAT GGAACCAGGG AGGGGTTAGC CCTCCCCCTG CAGGTCCCAC GATGAGGTTC
  TAATCTCAGT TTTTCAGATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137742259	ENSMUSSNP1595077	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49887515					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52846383 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	within coordinates
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	within coordinates
Rr466054	regulatory region 466054	124 bp proximal