rs49887613 SNP Detail

Summary

• ID
  rs49887613
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:48195078 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C AGATACCTGT GTTCCGTCTG TGCAACATTG TTTAATTAGC
  TTCCAACTGA CCTTGTCCCA TTGTGTGATA GTTTCAGAAT ACATGATGCT GTCCTTCTTA
  C
  TAAGCTTGCT TGGCGTAAGA GATGACTTAT GCAAGACACC CCATCCAAAC TTACCAGTCT
  CCTTATCCTC TCTCTCCTGG CCCTCTTTCT CTCAGGACCT T                    
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss136451043	ENSMUSSNP6926514	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49887613					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:48195078 () rs orientation: forward

Symbol	Name	Function Class
Gm51672	predicted gene, 51672	1320 bp upstream
Nxpe4	neurexophilin and PC-esterase domain family, member 4	within coordinates
Rr203996	regulatory region 203996	1031 bp distal
Rr203997	regulatory region 203997	279 bp proximal