rs49889217 SNP Detail

Summary

• ID
  rs49889217
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:4562837 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GCGAG TGGCACACAC TGTATGGCAC
  Y
  GTCCTTAATA TACACACCAC CCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52131386	NES15248705	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49889217					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52131386	NES15248705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:4562837 () rs orientation: reverse

Symbol	Name	Function Class
Esr1	estrogen receptor 1 (alpha)	within coordinates
Rr368918	regulatory region 368918	284 bp downstream
Rr426997	regulatory region 426997	806 bp distal
Rr426998	regulatory region 426998	within coordinates
Tssr92263	transcription start site region 92263	1204 bp downstream
Tssr92264	transcription start site region 92264	1014 bp downstream
Tssr92265	transcription start site region 92265	974 bp downstream
Tssr92266	transcription start site region 92266	957 bp downstream
Tssr92267	transcription start site region 92267	879 bp downstream
Tssr92268	transcription start site region 92268	822 bp downstream
Tssr92269	transcription start site region 92269	770 bp downstream