rs49889487 SNP Detail

Summary

• ID
  rs49889487
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:21820193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATTGTCAT AAGTATTGGC
  ACAGGCCGCC CCTGAAAGAC CTGGTGTCAT CTCCTCTTCT AGAGAGGAGA GCCGTGGGCC
  ACAAAGAAGA GATCCCAGCA GTGGAATCAC TAGTATTTGG AGTCACTGAA TGAATGTGCT
  AGTGGGGAGA CAACTGAGAG AGGAGAAGTC AAAGAACACA CGCCAGAGTC CTGACTGACT
  W
  ACCATTATGG CAAGTCCCAT TTTAACTGAC ACAGTTCCTG AAGACTATGT AACAAGAAAA
  CGCTTCTATG GGTTAGTGAG TATTTTACAC ACACTTCTCA CAAACCCACA TACACAATTT
  TAGTAGAGGT ATTTATAGGA TGGGCGCATA CTGGGAAGCC AGCACACATA GCTAACATTT
  GCCTCTGTTC CCAGCACATA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61125032	NES16636910	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49889487					SNP	A	A	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61125032	NES16636910	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:21820193 () rs orientation: forward

Symbol	Name	Function Class
Fbxl13	F-box and leucine-rich repeat protein 13	within coordinates
Gm8539	predicted gene 8539	701 bp upstream
Rr607927	regulatory region 607927	622 bp distal