rs49889848 SNP Detail

Summary

• ID
  rs49889848
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:128552745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGG GAGCCTTTTC CTACCTTCCA
  R
  GAGGAAGTGT AGGAAGAACT TGGCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147568480	ENSMUSSNP5310350	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	G
ss320503020	CHEV_2_128536561	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49889848					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:128552745 () rs orientation: forward

Symbol	Name	Function Class
D2Mit305	DNA segment, Chr 2, Massachusetts Institute of Technology 305	1582 bp distal
D2Mit305.1	DNA segment, Chr 2, Massachusetts Institute of Technology 305.1	1695 bp distal
Mertk	MER proto-oncogene tyrosine kinase	within coordinates
Rr1768	regulatory region 1768	1350 bp upstream
Tssr20066	transcription start site region 20066	1760 bp downstream
Tssr20067	transcription start site region 20067	1718 bp downstream