rs49889850 SNP Detail

Summary

• ID
  rs49889850
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24030433 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTTTT TATGTAGTTC AATTATAGAG
  C
  CCACGCTCTA GATGAAGCTG GCTTC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325327496	CHEV_17_23948426	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49889850					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24030433 () rs orientation: forward

Symbol	Name	Function Class
Gm49911	predicted gene, 49911	1755 bp downstream
Srrm2	serine/arginine repetitive matrix 2	within coordinates
Tssr142962	transcription start site region 142962	905 bp upstream
Tssr142963	transcription start site region 142963	1041 bp upstream
Tssr142964	transcription start site region 142964	1960 bp upstream
Tssr146669	transcription start site region 146669	1406 bp upstream