rs49890572 SNP Detail

Summary

• ID
  rs49890572
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:14554110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTAGAAA TGCAAATCCC
  ACCCTGGGTA TCAGGCTTCA GCTGCCAGCA GCCTGCTGAG GTGGGGTTAG AGGGTGGTTG
  TACAAGCAGA TGACCCCATG CCTTGCAATG TGTAAACAGA AAACAGATGT GTGTCCCCAC
  CCCCACCCCC AGCTTCTGAG TGTTCCAGCA TCACCGTGCT TTCTGCCTCT GCTCAGAGGA
  R
  TTCTTTTCTC TGCGAAGCAA TCTCTTGCTG CCAGCCACTC AAGTCTGTCA CTGAGCCACT
  GGAATCTCAG GTTTCCCAGG CAGAGTGAGG AGTGTTGGGC AGTGGCCTAT GGTGCCTGCG
  GTGCTGCACA GCCAGGCTCC AGGCTCAGCT CTGCCATTTA TAGCTGAATG ACTGGCCAAG
  TTCTCATCCC TTCAGGCCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60690278	NES16226459	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49890572					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60690278	NES16226459	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:14554110 () rs orientation: forward

Symbol	Name	Function Class
Amotl1	angiomotin-like 1	within coordinates
Gm34263	predicted gene, 34263	835 bp upstream
Tssr2784	transcription start site region 2784	795 bp upstream
Tssr83841	transcription start site region 83841	833 bp upstream
Tssr88175	transcription start site region 88175	709 bp downstream
Tssr88176	transcription start site region 88176	741 bp downstream