rs49890593 SNP Detail

Summary

• ID
  rs49890593
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:72687313 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGGAACC TGAAGAGCCT
  AAGAGGTTTT TCCTAGAGCA GTCTACTGCC TCGGGGACAC CAGGGAGTGT ACTGCAGACC
  ATTAGGAGCC CTGGCAGCGA AGCCCAGTCT GCAAGGCATC AAGAAGCCTT TGTCACCTGC
  CGCCAGGGGG GATTAGCAAC CCAATTGGCT ATTTTGAGGT TATCAGTTTA AAATTCCTAC
  S
  TGGCCTGGAG GCTCTGCTCT GTCTGTATCT GCTGCCCCTC CAGGCAAGGT CTGTCTGTGT
  GGCTGCTGTC TTCTTCTTAG GTTTATTCAG AGGACCTTTA TTTTGCAAAA CCAAAGCCAG
  GCTTCACTTC GAACTAATAC GAAATGGTCT TTGCCCTAAA ACAACATCAA TTCTGCGCTG
  GAAAAAAGAG AGAGAGATTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61421319	NES16805506	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49890593					SNP	G	G	G	G	G	G	C	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61421319	NES16805506	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72687313 () rs orientation: forward

Symbol	Name	Function Class
Gm27204	predicted gene 27204	823 bp upstream
Gm68819	predicted gene, 68819	384 bp upstream
Rr197251	regulatory region 197251	1713 bp distal
Rr197252	regulatory region 197252	within coordinates