rs49892507 SNP Detail

Summary

• ID
  rs49892507
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:47261177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGTTCCTTTA TAAGTACCGA ATCCTCTGTC CATCATAACA
  GGCCTGCCAT CTTGAAGACG AGACTGTAGT TGAGACATTA AGCAAAAATA CATAGATTGT
  R
  TGGTAGTGAT GCAGCAGTCA CAGGGGGATC TGGAGTACCA GCAGGGGGGC TTTCCTTTTA
  AAAGGTCAGT GATTAAAGGA ATGAGAGCGG AGAGAGACA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148985314	ENSMUSSNP6798871	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss324335511	CHEV_13_47203069	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49892507					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:47261177 () rs orientation: forward

Symbol	Name	Function Class
1700026N04Rik	RIKEN cDNA 1700026N04 gene	within coordinates
Cpgi5551	CpG island 5551	841 bp distal
Dek	DEK proto-oncogene	1500 bp upstream
Rr479039	regulatory region 479039	1265 bp distal
Rr479040	regulatory region 479040	643 bp distal
Rr479041	regulatory region 479041	1048 bp proximal
Tssr119627	transcription start site region 119627	1290 bp downstream
Tssr119628	transcription start site region 119628	1271 bp downstream
Tssr122372	transcription start site region 122372	1999 bp upstream
Tssr122373	transcription start site region 122373	1954 bp upstream
Tssr122374	transcription start site region 122374	1826 bp upstream
Tssr122375	transcription start site region 122375	1591 bp upstream
Tssr122376	transcription start site region 122376	1573 bp upstream
Tssr122377	transcription start site region 122377	1530 bp upstream
Tssr122378	transcription start site region 122378	1495 bp upstream
Tssr122379	transcription start site region 122379	1480 bp upstream
Tssr122380	transcription start site region 122380	1468 bp upstream