rs49892746 SNP Detail

Summary

• ID
  rs49892746
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:31352232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGTACA ACTCTTAAGC
  TGCTGAAGGA GAGACAAGCA GGGTCTGGAA GGATCACTGG CTGTACTCTG GTGAGTACTT
  ACGCTGACAT AGCTATCCAT TCTACCAGAG GGAGTTGGTT TTTTGTTTTT GTTTTTGTTT
  TTTTTTAAAG CTTGGGCAAA CTTACCAGGT CTTATTTAAA TTGGGGATTA GATTTGCTTT
  Y
  TATCTGCTCT ACAAGAGTGA ATTGGGGCGG GGGGGGGGAT GTTAAAAAAA AAGAGTGAAT
  TGGTTGGGTC AGTAATAACA TATATACAAC ACCCCTCCCC ACAAAATGCT AACTTGGCTG
  CCAGCCATTG GAGAACATAG CACTATGGGT ATATACCATA AATGACATTT CTTCTTTGTA
  AAAAATGTTA CTACATTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss60562179	NES16490568	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	T	C	T		T	T		C
ss325358814	CHEV_17_31270203	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs49892746					SNP	C	C	T	C	C	T	C	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60562179	NES16490568	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:31352232 () rs orientation: forward

Symbol	Name	Function Class
Rr341223	regulatory region 341223	within coordinates