rs49892898 SNP Detail

Summary

• ID
  rs49892898
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17814612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCCATGGTCC CGACGCTTCG CCGCCTTCGC CCGCCCGCTG
  GCTCGCGCGC TAAGCAGCGC GCACAACTAA CTTCTCCGGC CTGGGCCGGC GGGGCGCGCA
  S
  CCGGGAGCGG TCGGTAGGAG GCTGAGAGCC CGGGAGCAGA GCAGAACAGC TAGCCCCTCT
  CAGGCTCTTA GACCATGCCT GGGGCAGAGG GGACGGGGT                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss146130669	ENSMUSSNP4856143	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs49892898					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17814612 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	978 bp distal
Cpgi10666	CpG island 10666	within coordinates
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	328 bp proximal
Rr544887	regulatory region 544887	374 bp proximal
Tssr158513	transcription start site region 158513	372 bp downstream