rs49893717 SNP Detail

Summary

• ID
  rs49893717
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:83717976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAGATAT GTTTACAAAA
  CTAATGTTCT ATCTTATTTA TTCCAAAGAC GAGTTACAAT TTAGAAATGG AGGCTGAAGA
  GTTAATTGGC AGCAGTGTGA CGATTGATTC CATCATGAGC AAAATGAGAG ATATTAAAAA
  TAAGATAAAT GAAGACTGTA CTGATGAGCT AAGCTTGTCT AAAATCTGTG CCGATCACAC
  S
  GGTGAGTTTT TTCTTTGCTT AAAAAAGCAA ACAAAAACCT AAAAAAAAAA AAAAAAAAAC
  CGTTGAGAGC CTCCGAGTTG AAGGTGAGCA GTGTTAACCA CCTTGTGTGG CCTAATGAAG
  TTGTTTCTGT TTTTCTCAGT AAGTGATGGT TATCCGTTAA ATTGTACTTC ATACTTTAAC
  TTCTTTTGTT TGGAAACATT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136709575	ENSMUSSNP6954010	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	G
ss323046436	CHEV_9_83729530	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49893717					SNP	C	C	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:83717976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22096	CpG island 22096			878 bp distal
Gm57060	predicted gene, 57060			1325 bp upstream
Rr383689	regulatory region 383689			568 bp downstream
Rr683950	regulatory region 683950			1336 bp distal
Rr683951	regulatory region 683951			1195 bp distal
Rr683952	regulatory region 683952			302 bp distal
Tssr86358	transcription start site region 86358			1255 bp downstream
Tssr86359	transcription start site region 86359			1187 bp downstream
Tssr90761	transcription start site region 90761			1357 bp upstream
Ttk	Ttk protein kinase			Coding-Synonymous
				Noncoding-Transcript-Variant
				Splice-Site