rs49894458 SNP Detail

Summary

• ID
  rs49894458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138724121 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTAAAACA GTCAAAGCAT CCTGGTGCTT TGTTTGCAAA
  ACAAAATCAC ACCACCAGCA ACAAAAAATT ACTTAATGAG TTTTAAGGTT CTGCTCATGA
  Y
  CAGATACCCA ACCAATACCC AAATGTTCTA GAATTTCCAA GTGCTTTTAA AAAATACTTC
  TTTTTATTAT TTCTAGTTAT CTGCATGTAT ATGTCTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss145581701	ENSMUSSNP3836612	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49894458					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138724121 () rs orientation: forward

Symbol	Name	Function Class
Gm70139	predicted gene, 70139	1514 bp downstream