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rs49895186 SNP Detail
Summary
  • ID
    rs49895186
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr12:33152786 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGATACAAAG CCCACATGCT
    TAAACAGTTT GATAAGTGGG TTAGAGTCTC AGTAACCTGG CAAAGAACCA GCCTCCCTGT
    CCAGATGCAA AGAGCCAGAA GGTTCCCGTT GATCTTATTG TTCTCTGAGA CGCAGAGAAG
    GTCCCAAGGG TGGCACAGGG GGAGTAGGAG CTTGAGCTTT GGTGTTGGGC CTGCCTGTGA
    Y
    CTTGCTCCTC CTGACCCTTG CTTTGTGACT CAAAGCAGAA TCCTTAACTG TTCCCCATCT
    GAAAACAGTG TGAGGAACTG ATCAGGGGGA CCAAAGACGA TCCTTTGTGT AAGTTCTCCG
    TGTGACAGAT GTTCCCAACA GTGATTGCAT GCTACATCGA CTCGTCGAGC CTGGAACAGT
    CAGGATCTCC CTGTTTAAAG                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
DBA/2J
ss137582127 ENSMUSSNP172782 ENSEMBL ENSEMBL_Sanger f SNP C C T
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
DBA/2J
rs49895186 SNP C C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr12:33152786 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm59430 predicted gene, 59430 within coordinates
Rr464869 regulatory region 464869 64 bp distal
Rr464870 regulatory region 464870 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory