rs49895190 SNP Detail

Summary

• ID
  rs49895190
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:101009963 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCA CTGCAAGGAA TTCATGTGAC
  T
  TCACAGCTCC GTCTGGCATG CCACA                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss148929922	ENSMUSSNP4432973	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss321627758	CHEV_5_101291116	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49895190					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:101009963 () rs orientation: forward

Symbol	Name	Function Class
Gm73351	predicted gene, 73351	within coordinates
Gpat3	glycerol-3-phosphate acyltransferase 3	Intron
Rr378349	regulatory region 378349	335 bp upstream
Rr615578	regulatory region 615578	560 bp distal
Rr615579	regulatory region 615579	71 bp distal
Rr615580	regulatory region 615580	within coordinates
Tssr47495	transcription start site region 47495	76 bp downstream