rs49895727 SNP Detail

Summary

• ID
  rs49895727
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:88482931 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACATGCAG AAATAAAAGG
  AACAACCAGG GCACCCAGAC AGTTTGGATG GGCCATCTAG CAGGTAGACA CAGGAATGGC
  AATGCCAAGA ATGGACAAGA GGCTCATGCC AGAAGCCCCA CCACTCCCCC AAGAGGATTT
  TCTGCAGTTC TGTCCCAGAG AGCTGAGTTC CCTCAAAGTC CCACACCAGT CACCACACAT
  R
  GGGGACAAAG AAGCAGGTGA ACAGATATTT CCGATTTCAC AACTCAGACA CTCAAACACT
  TGCCTGATGG CTTCCAGCAG ACATCAGGGA GATCAAGGTG TGTGAGGAGG GTCTGGAAAG
  GAGAAAGCTC AGAAGGTTCC CAGCAGTGGG AAACAGAACG GACAGAAGGC TGGGGGCTGG
  CATGGCGGGG GACTCCAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63579274	NES17028540	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49895727					SNP	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63579274	NES17028540	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:88482931 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7510	CpG island 7510	1859 bp proximal
Gm62180	predicted gene, 62180	within coordinates
Tssr132609	transcription start site region 132609	1552 bp upstream
Tssr135809	transcription start site region 135809	1478 bp downstream
Zdhhc25	zinc finger, DHHC domain containing 25	1574 bp upstream