rs49896332 SNP Detail

Summary

• ID
  rs49896332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:38705647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGGACAG GTAACTGTGC
  TGTCTGTCTG CTCATTCTCC TTTCTCCACA GTGTTTGATA CTAGGGAGCA TTTCCTCTCT
  TCTGGAACTT TCCCTTTGGC CACCATGACT CCACATTCTC CTGGCTTCTG TCAGGCCATT
  TTTCTCTCTC TCTGGCAGAC TTCCATTCCT CAGCGACAAT CTTGATTTGT GCTCTTCCCA
  R
  GCCCGGTTCT CCAGGCTCTT GGTTTATGTT CTCCATGGGT GGCCCCATAG AGTCTCTCCA
  TGTTCCTTGC CAAGCCAGTG TCTGGCTGTT TACAAGTCTC TGCTGTTCTT CCTGAATGTC
  TCCCAGGAAC CTCAGGATCA ATGGATCAGA ATGAGACTCT GCCCTCTCCA TTCCTCACCC
  CTCATCACAC AGCCTGTGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60719300	NES16354824	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49896332					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60719300	NES16354824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:38705647 () rs orientation: forward

Symbol	Name	Function Class
Aff3	AF4/FMR2 family, member 3	1611 bp upstream
Rr366875	regulatory region 366875	1411 bp downstream
Rr409725	regulatory region 409725	1622 bp distal
Rr409726	regulatory region 409726	1153 bp distal
Rr409727	regulatory region 409727	455 bp distal
Rr409728	regulatory region 409728	within coordinates
Tssr11346	transcription start site region 11346	1633 bp upstream
Tssr11347	transcription start site region 11347	1621 bp upstream
Tssr11348	transcription start site region 11348	1566 bp upstream
Tssr11349	transcription start site region 11349	1554 bp upstream
Tssr11350	transcription start site region 11350	1532 bp upstream
Tssr11351	transcription start site region 11351	967 bp upstream