rs49896473 SNP Detail

Summary

• ID
  rs49896473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73359042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATGGTAAAG CTAGAGGCCG
  GGGAACAGAG CCCTGTGTGA ATAGCAGGCT CGGAGCTGGG GTAGAGACTC AGGTGGACAG
  TCTCCCATGA GAATAACAAG CCCTTTGAGG AAGCTGGAGA GATGAGTACC CCTGAGGTTG
  GTTGTGTCAG AGAGACAAGA TGTCTGTTGT TGAGCATCGG GATTTGGATG GGGCTGGGAT
  R
  GAGGGAAGAA GTCCAGCGTT GGCTGAGGAG CCTGGGTCTG TCTCTTCACC TCTTCCCTGG
  TTGGGCTGGC TTGGAGGATG TGGGAGCTTC TTCTCTCAGG TGCCTGCTGC TGAAGGCTGT
  GACTCTGCAG ACAGTAACCA GGCATTACCT AAGTCTTGGT TCATGTTGTG AGCAGAGGGC
  AGGAAAAGGA GAAGGAAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148110643	ENSMUSSNP6911459	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49896473					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73359042 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	695 bp distal
Tssr4621	transcription start site region 4621	629 bp upstream
Tssr4622	transcription start site region 4622	691 bp upstream
Tssr131529	transcription start site region 131529	641 bp upstream
Tssr134702	transcription start site region 134702	75 bp downstream
Tssr134703	transcription start site region 134703	115 bp downstream
Tssr134704	transcription start site region 134704	130 bp downstream
Tssr134705	transcription start site region 134705	142 bp downstream