rs49896871 SNP Detail

Summary

• ID
  rs49896871
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52122728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCTGGGT GTGACCATGT
  TTCCACTCCC CTCATTTACC TCCCCTGAAA AATGGAAGAA TGAAATTGTA ACACACAGTT
  TAGGTCTTAT TTGTTAAATG CATCATTTTC TATTTCTTTC TCCTTGAACA TATTTCTTTA
  CTATTTTCTG GTTTAACAAT TTCTACTGGA GGGAGGAGAG ATTCTCAATT TTCCAATTCG
  R
  TGAAGCATTA AGAGTCAGAT CCAAGTAGGA CCTCTGAAAT TATGTGTGGA GCCAGCATTG
  GCCAACCCTT TGAAATCTGG CCCACTGTAC ATGGACCAAG TCCTGGAAAC TGGCTTTCTT
  CTAATACCAT AGCACACAGC AGAGCACAGA GAACTGGAAA ATTAAGACCA AAGTTTCACC
  AAAGTTTCAC TTTAGATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60215882	NES15722277	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49896871					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60215882	NES15722277	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52122728 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Rr327240	regulatory region 327240	128 bp proximal
Rr328951	regulatory region 328951	54 bp distal
Tssr141422	transcription start site region 141422	981 bp upstream
Tssr141423	transcription start site region 141423	945 bp upstream
Tssr141424	transcription start site region 141424	598 bp upstream
Tssr141425	transcription start site region 141425	1741 bp downstream