rs49896969 SNP Detail

Summary

• ID
  rs49896969
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152732545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCGCAGT CCTCCATGTC
  ACCAGCCAGC AGGGTCCTTG TAACAGTCTG CTCTTGTCTC CATAGCTTAT CATGTCCAGA
  GTCGCCCACA GTTTGCTGCA GATCTGTTGC TCACTGTGCA GTTTGAATGA GATGTCTCCA
  GGTCTCTGGC ATCGAGAACA CAGTCCCCAG GGGTGGCAAT GTTTGAGAGG TTTAAGAGGC
  R
  TGGCCTTGTT AGTGGAAGCA CACCACACTG GAGAAGATCT CTGTGAGTTC AAACACTCAC
  AGCATTTTGA GGTCATTTCT CTGTGTTTCT TGCTGGGAGC TCCCAGCCAC TGCGTCTGCT
  CTGCCATGGT GGACTCTCAT CCCTCTGGGA CCATAAACCC AAATAATAAT TTTTATTTTT
  ATTTATTATT ATTATTATTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148084600	ENSMUSSNP4439644	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss321435528	CHEV_4_152022197	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49896969					SNP	G	A	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152732545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	852 bp distal
Gm69406	predicted gene, 69406	within coordinates
Rr87959	regulatory region 87959	within coordinates
Rr93365	regulatory region 93365	545 bp distal
Rr97434	regulatory region 97434	within coordinates