rs49897110 SNP Detail

Summary

• ID
  rs49897110
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88816119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA AAAAATTGGG GGGTGGGGCT
  A
  GAGAGAGGTG AAGGCACCCC ACTCA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132546890	ENSMUSSNP171080	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss323782842	CHEV_11_88786607	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49897110					SNP	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88816119 () rs orientation: forward

Symbol	Name	Function Class
Scpep1	serine carboxypeptidase 1	within coordinates
Scpep1os	serine carboxypeptidase 1, opposite strand	within coordinates
Tssr110047	transcription start site region 110047	1017 bp upstream
Tssr110048	transcription start site region 110048	1000 bp upstream
Tssr110049	transcription start site region 110049	945 bp upstream
Tssr110050	transcription start site region 110050	734 bp upstream
Tssr110051	transcription start site region 110051	696 bp upstream
Tssr110052	transcription start site region 110052	678 bp upstream
Tssr110053	transcription start site region 110053	650 bp upstream
Tssr110054	transcription start site region 110054	583 bp upstream