rs49898127 SNP Detail

Summary

• ID
  rs49898127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48588978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATACACA GCCCCTGCTT
  GTGCTAAGGT GGTATTAGTG GATGAAGCCG GCCCCCAACC TTAGGAGAGA GTCATGTCTC
  TGTGGTGAGC ATGAGCCCGT CTGTGAGCCA CAGCTCAAAG CCAGACAGAG TGTTTGGAAA
  TGCTCAAACC AGTAAGTGTT GGAGGTGAGT GAGGGGGGAT GTAGCTCAGT TGGTGGCGTG
  Y
  ATTAATAGCA TTCTGGAAGC CTTGAGTTCT AGCCCAAGCA CCACATAAAA AAGCCAGGCC
  CAGGTCTGTG ATCGAAGCAC TAGGGAGATA GAGGTGGGAG GTCACAAATC GAAGGTCTTC
  CTTGGGTACA TGATAAGCTG ACTAGCTTGG GCTACACAAG ACGCTGCCCC ACACTCTCCT
  GAATATAGAG GGTGGTGAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133165019	ENSMUSSNP4752747	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	C
ss321794014	CHEV_6_48562043	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49898127					SNP	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48588978 () rs orientation: forward

Symbol	Name	Function Class
Gm38804	predicted gene, 38804	within coordinates
Gm44965	predicted gene 44965	within coordinates
Gm45021	predicted gene 45021	within coordinates
Gm67224	predicted gene, 67224	within coordinates
Rr135554	regulatory region 135554	978 bp distal
Rr135555	regulatory region 135555	1623 bp proximal
Tssr60741	transcription start site region 60741	1694 bp downstream
Tssr60742	transcription start site region 60742	1705 bp downstream
Zfp775	zinc finger protein 775	within coordinates