rs49898170 SNP Detail

Summary

• ID
  rs49898170
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156075462 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGC CTCTGTAAAT TCTTATCTAT
  R
  CAAGCATACA ATATTTATAA ATAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148124144	ENSMUSSNP2836010	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321444376	CHEV_4_155365114	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49898170					SNP	A	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156075462 () rs orientation: forward

Symbol	Name	Function Class
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6	within coordinates
Cpgi15496	CpG island 15496	471 bp proximal
Rr377473	regulatory region 377473	1212 bp upstream
Rr606627	regulatory region 606627	1607 bp distal
Rr606628	regulatory region 606628	476 bp distal
Rr606629	regulatory region 606629	336 bp proximal
Rr606630	regulatory region 606630	1569 bp proximal
Rr606631	regulatory region 606631	1634 bp proximal
Rr606632	regulatory region 606632	1645 bp proximal
Rr606633	regulatory region 606633	1887 bp proximal
Sdf4	stromal cell derived factor 4	1867 bp upstream
Tssr1404	transcription start site region 1404	1934 bp upstream
Tssr40748	transcription start site region 40748	1395 bp upstream
Tssr44987	transcription start site region 44987	1326 bp downstream
Tssr44988	transcription start site region 44988	1599 bp downstream