rs49898173 SNP Detail

Summary

• ID
  rs49898173
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129142927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGGAC TTCATGAGAA ACAGCGCTCT
  M
  GAGCCTGCCT CTGCGATCTG GGTTC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320504788	CHEV_2_129126743	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs49898173					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129142927 () rs orientation: forward

Symbol	Name	Function Class
Gm14023	predicted gene 14023	within coordinates
Il1a	interleukin 1 alpha	within coordinates
Rr564905	regulatory region 564905	446 bp distal
Tssr20111	transcription start site region 20111	563 bp downstream
Tssr26199	transcription start site region 26199	1190 bp upstream
Tssr26200	transcription start site region 26200	1139 bp upstream
Tssr26201	transcription start site region 26201	1020 bp upstream
Tssr26202	transcription start site region 26202	957 bp upstream
Tssr26203	transcription start site region 26203	935 bp upstream
Tssr26204	transcription start site region 26204	830 bp upstream
Tssr26205	transcription start site region 26205	777 bp upstream
Tssr26206	transcription start site region 26206	745 bp upstream
Tssr26207	transcription start site region 26207	667 bp upstream
Tssr26208	transcription start site region 26208	439 bp upstream
Tssr26209	transcription start site region 26209	358 bp upstream
Tssr26210	transcription start site region 26210	241 bp upstream
Tssr26211	transcription start site region 26211	104 bp upstream
Tssr26212	transcription start site region 26212	61 bp upstream
Tssr26213	transcription start site region 26213	539 bp downstream
Tssr26214	transcription start site region 26214	1948 bp downstream
Tssr26215	transcription start site region 26215	1971 bp downstream