rs49898687 SNP Detail

Summary

• ID
  rs49898687
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:98887718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTTGTT TCTGAGTCAT
  GAATTCAACT GGAGGCAAGA TAGAAGAATG AGAATGTAGA TGAGGGAAGG ATATATTTAT
  TTTTAAAGAA ACTACCTGGG CAAGAGAAAC TTTTCTTGTA GGAGGGAAAT ATAAGACAGA
  AGAAGACCTG ATAGCCTTGG TTAGAAGGAC ATATAACAGT TCAACATGAA GGTATACTCC
  K
  GTACAGCAAG GGGATCAGTA GTTCAAAGCC ATGCTCAGCT AGGTAGAGAG TTCAAGGCCA
  GCCTGGTGAG CTAAAGGAGA ACCTGTCTTT AAAGGGGATC GGGCAAAAGG GAACTTAATA
  AATACAGCAT TATTGTGTAT AATGAATGCA AAGGTCAATA ATGAATGGGG GAGGTATCAC
  GAACATTATC ATTGAATAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61685124	NES17645812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49898687					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61685124	NES17645812	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:98887718 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4974	CpG island 4974	740 bp distal
Rr403444	regulatory region 403444	941 bp downstream
Rr470976	regulatory region 470976	837 bp distal
Rr470977	regulatory region 470977	1028 bp distal
Rr470978	regulatory region 470978	317 bp proximal
Tssr114655	transcription start site region 114655	906 bp downstream
Tssr114656	transcription start site region 114656	840 bp downstream
Tssr114657	transcription start site region 114657	825 bp downstream
Tssr114658	transcription start site region 114658	797 bp downstream
Ttc8	tetratricopeptide repeat domain 8	within coordinates