rs49899297 SNP Detail

Summary

• ID
  rs49899297
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:145881470 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTCTCATTT AGACATACTG GATATTTTGG
  TCGCCTCGAT GGCTGTCAAC ATACTCCGGG GAAAATATCT GTCCTTGAAG GCCAGGCAAA
  AGGAAGGAAC AAGGAATGAG GGCTGGTTTT GAAAACCAGC TTTTATTTCA CTTCAGAAAG
  K
  CCAGTTCCAA AGAAATGAGT TAGATAGGGG GACAAACTGT GTTCTAATGT TTACGGCATG
  GCACAAAAAT CCCAAAGCTT CAAGAGTCAA AAGCTCTGGC GAAATTCCTG ATGGCTTTCT
  GGGCGTGGCA CGAAGAGCTC TTTCTCTTGT                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133984561	ENSMUSSNP1791622	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	T
ss322075170	CHEV_6_145884264	CHEVERUD	SCREENING_POP	f	SNP				T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49899297					SNP	G	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:145881470 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18164	CpG island 18164	1303 bp distal
D6Mit200	DNA segment, Chr 6, Massachusetts Institute of Technology 200	300 bp distal
Sspn	sarcospan	within coordinates
Tssr59564	transcription start site region 59564	1608 bp downstream
Tssr59565	transcription start site region 59565	1583 bp downstream