rs49899891 SNP Detail

Summary

• ID
  rs49899891
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118786641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCTC AAGGAAATGT ATGCTTGCAT
  S
  GGAATGTACC TAAGGTGTTG AGGCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss145804537	ENSMUSSNP4729679	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49899891					SNP	G	G	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118786641 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19632	CpG island 19632	1859 bp distal
Gm73654	predicted gene, 73654	1210 bp downstream
Rr381384	regulatory region 381384	291 bp downstream
Rr654601	regulatory region 654601	1355 bp distal
Rr654602	regulatory region 654602	727 bp distal
Rr654603	regulatory region 654603	830 bp distal