rs49900498 SNP Detail

Summary

• ID
  rs49900498
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:84344504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A CTGTTTTGAT TACCACAGTC CAATTTAGAA TAGATCTAAA
  TTTCTTTTTA GTTGTATTTC TTTACTGGTA AAAGCCAGGT ACATGTTTTC CCCAATTTTT
  K
  CAGGGGGAAA AAAAAAAGTC TGGAGAGATG GCTCAGTTGT TAAGAGCCCT GACTGCTCTT
  CCAGAAGACC AGGGTTCAAT TCCCAGCACC TGCATAGCAG T                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	MSM/Ms
ss137927392	ENSMUSSNP2631396	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	MSM/Ms
rs49900498					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:84344504 () rs orientation: forward

Symbol	Name	Function Class
Ptgr2	prostaglandin reductase 2	within coordinates
Rr469618	regulatory region 469618	1620 bp proximal
Tssr114334	transcription start site region 114334	1508 bp downstream