rs49900862 SNP Detail

Summary

• ID
  rs49900862
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79586531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTGGACCT GTCAGGCAGC
  TCTGTAATTC CCAGAAAGAA GGACAACAAT CCTCTGGGGA GGACTGTCCT CTGTGTCCTC
  TGGCAAGTCC TAGGCTCATA GGCACCTGAC TCCTCTGCCT CCTTCCTCTT CTGTCCCTTT
  CCTGGGTCAC TGCCCCTTCG CACAGGCTCT AAATGTGCAA TGCCCTCTGT GGACGCTATA
  Y
  GTAGCTACTT AAATTGTATT TTAACAGTGC CGAAAATAGA ACCCAGGGTG TTTGTGAACA
  CCAGACAAGT GTTCAACCAG GGAGCTGCAT ACCCAGTCTA AACCATAGAT GATAGAATCT
  AAATAATATA GAAAAAGGGC TTCTCCTTTG CTGGTCACAG GGCTCCACGC CTGTAATCCC
  AGTGCTTACA AGCTTGAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss61024854	NES16103339	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs49900862					SNP	C	C	C	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61024854	NES16103339	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79586531 () rs orientation: forward

Symbol	Name	Function Class
Arpin	actin-related protein 2/3 complex inhibitor	1519 bp upstream
Cpgi19319	CpG island 19319	1388 bp distal
Gm31966	predicted gene, 31966	within coordinates
Rr649743	regulatory region 649743	1703 bp distal
Rr649744	regulatory region 649744	667 bp distal
Rr649745	regulatory region 649745	556 bp distal
Tssr73196	transcription start site region 73196	1528 bp upstream
Tssr73197	transcription start site region 73197	1412 bp upstream