rs49901128 SNP Detail

Summary

• ID
  rs49901128
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136095971 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCTC CTAAATCTGC
  AAGCAGTGGA ATCCCCCACA GCTCACCAGG TGAATAATTT CTAGAGCTTT TCAAACCTGA
  AATGATCACA TTCAGATCCA TCTTGAAATT CCACCTTAGC GGTGGCTCTT ACACATCTTA
  CACATAGATC TCTCATCCCA TAAGTCTCCC AATCTCAAAC CACTGGTGTA TTTCTAAGTC
  M
  AAAAGAGTGG AAACTCATGC AACATCCCGA ACCTTCCCTG TATCAGCTCC AGGGAAGCTC
  CAGGGTGTCC TTGCTCCCAA GCACCCTATT CCAACTCATA GTGGCACCCA TGTCCTCTCT
  TTCCTTCTCT CTATCTGCAT GCAATCACAC ACATGTGAAG TCTAATAGGT GGTAAATCTT
  AATCTCAAAA CACAAACTCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss133829258	ENSMUSSNP2171203	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321993338	CHEV_6_136068991	CHEVERUD	SCREENING_POP	f	SNP		A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49901128					SNP	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136095971 () rs orientation: forward

Symbol	Name	Function Class
Grin2b	glutamate receptor, ionotropic, NMDA2B (epsilon 2)	within coordinates
Tssr2039	transcription start site region 2039	1314 bp upstream