rs49901757 SNP Detail

Summary

• ID
  rs49901757
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:45606649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCATTTTTC TTGGATTTTG
  GAGAATAAAT ATAGGTTAGT AGGCGAGTGA AGCAACTACC GTCACCCTCT GAGACATATC
  CCCTGTCCTA GAAGAGACTT TTTTTTTTTG ACTGAAAAAA AGTCTGTAAG CAATGATTAC
  AAACTAAACT TACTAATTAG AAGAAATGAC CAGAGGTAGC TGGCATCTCT GGCTTGCTCT
  K
  TGATGGAGTG ATTTAAGCTG TGCTCCTGAG TCTAGCCCCT TTAGCTGCCC TGTTCTCTAA
  ATGCAACTTT TTCATATAGA CTGTTCTCCT ACAACTTTAG TGTTTGCAAA TGTTACATGG
  AGGGAAAGAC TGACTTAGCT AATAGAAGGG GGAGTAGGGA TGAGTATCAG CTTTAGTCAC
  AGTATTCCAG TTTTATTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52410603	NES15387120	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	G	T	G	T	T	G	G	T	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49901757					SNP	T	T	T	G	T	G	T	T	G	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52410603	NES15387120	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:45606649 () rs orientation: forward

Symbol	Name	Function Class
Rr267454	regulatory region 267454	553 bp proximal