rs49901797 SNP Detail

Summary

• ID
  rs49901797
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:127131022 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCAAGTGT ACTTATTTCC
  TTGCGTGTGG ACTCGGGTGT GCAGAAGCAC GAGTGTGCTC TGCTGCGGGG GTGGCGCCAG
  GATTAATAAG AGCTCTTTCT CCCCACCACT ACTTTTTTTT TAAACCCCCG AAGGTGGAAA
  GATCCTTTAC TGGGTAGGAC CCAGGTAGAG TGATAAACTT CAGCCAAATA CGAGTTTTCC
  Y
  GAACTTCCAT CCCTCCAGGA CGTGCCCCCT CCCGTCTCCC TCCCTCTTGC GCCTAGCAGT
  TTCGGTTGGA AAGTGTACAA AGCCTGTAGG TGTAAGGTGC AGCCGGGTGT TGGGTGTTTA
  TAGGCATATT TCTGCAGGAA CCTGCCACCT AGGCACACAT TCTAACAAGC TCACCTGGCG
  GATACCAGCC AGCCAGGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60943868	NES16183195	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49901797					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60943868	NES16183195	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:127131022 () rs orientation: forward

Symbol	Name	Function Class
9330179D12Rik	RIKEN cDNA 9330179D12 gene	within coordinates
Ccnd2	cyclin D2	1866 bp upstream
Cpgi18035	CpG island 18035	1590 bp distal
Cpgi18036	CpG island 18036	1094 bp distal
Cpgi18037	CpG island 18037	196 bp distal
Cpgi18038	CpG island 18038	within coordinates
Gm56941	predicted gene, 56941	within coordinates
Rr145781	regulatory region 145781	within coordinates
Rr399942	regulatory region 399942	1322 bp downstream
Tssr59022	transcription start site region 59022	1485 bp downstream
Tssr59023	transcription start site region 59023	796 bp downstream
Tssr59024	transcription start site region 59024	407 bp downstream
Tssr63378	transcription start site region 63378	1585 bp upstream
Tssr63379	transcription start site region 63379	668 bp downstream